Cilia Bundle Visualizer

Cilia lattice

N_spots in X

N_spots in Y

average density

coverage ratio

0.25

patch length

0.33

crystalline order

patch order

0.5

Cilia size

cilia length mean

cilia length std

cilia radius [μm]

0.20

Ciliary beat kinematics

k_0 (static curvature)

a_0 (wave number)

0.8

beat amplitude mean

beat amplitude std

Ciliary beat frequency (CBF)

CBF mean

CBF std

0.01

Metachronal wave

wave amplitude

wave angle (deg)

-90

wave noise

0.01

Ciliary beat orientation

beat angle mean (deg)

beat angle std (deg)

Microscopy setup

view azimuth (deg)

-90

view elevation (deg)

cilium resolution (x)

0.8

field of view [px]

256

pixel size [μm]

0.1

NA (numerical aperture)

0.80

Imaging mode

PC: plate radius [% pupil]

PC: phase shift [rad]

1.57

PC: attenuation α

0.60

DF: inner NA fraction

0.25

source wavelength λ [nm]

550

source relative intensity I

0.50

z_0 (focus distance) [μm]

0.00

Δn (refractive index diff)

0.05

κ (cilia absorption)

0.05

scale bar [μm]

Curvature profile ϰ(s)

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